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Liens UNIL

Faculty of Biology and Medicine

Department of Fundamental Microbiology

Publications

Publications | Masters and Phd thesis

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Publications

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2024 | 2023 | 2022 | ...

2024

Genomic and phenotypic imprints of microbial domestication on cheese starter cultures.

Somerville V., Thierer N., Schmidt R.S., Roetschi A., Braillard L., Haueter M., Berthoud H., Shani N., von Ah U., Mazel F. et al., 2024/10/05. Nature communications, 15 (1) p. 8642. Peer-reviewed.

[DOI][Pmid][serval:BIB_845A090A7F21]

preview resource BIB_6A0FAFA69050.P001

Interplay between gut symbionts and behavioral variation in social insects.

Liberti J., Engel P., Cabirol A., 2024/10. Current opinion in insect science, 65 p. 101233. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_6A0FAFA69050]

preview resource BIB_EF2AA95DF8B4.P001

Fecal transplant allows transmission of the gut microbiota in honey bees.

Cabirol A., Chhun A., Liberti J., Kesner L., Neuschwander N., Schaerli Y., Engel P., 2024/09/25. mSphere, 9 (9) pp. e0026224. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_EF2AA95DF8B4]

Gut microbiota influences onset of foraging-related behavior but not physiological hallmarks of division of labor in honeybees.

Liberti J., Frank E.T., Kay T., Kesner L., Monié-Ibanes M., Quinn A., Schmitt T., Keller L., Engel P., 2024/09/11. mBio, 15 (9) pp. e0103424. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_12C359371AC6]

preview resource BIB_3ADF7D01186D.P001

Neuroactive metabolites modulated by the gut microbiota in honey bees.

Cabirol A., Moriano-Gutierrez S., Engel P., 2024/09. Molecular microbiology, 122 (3) pp. 284-293. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_3ADF7D01186D]

preview resource BIB_88028872E2EA.P001

An engineered bacterial symbiont allows noninvasive biosensing of the honey bee gut environment.

Chhun A., Moriano-Gutierrez S., Zoppi F., Cabirol A., Engel P., Schaerli Y., 2024/03. PLoS biology, 22 (3) pp. e3002523. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_88028872E2EA]

preview resource BIB_5EE5F5ED8979.P001

Host-derived organic acids enable gut colonization of the honey bee symbiont Snodgrassella alvi.

Quinn A., El Chazli Y., Escrig S., Daraspe J., Neuschwander N., McNally A., Genoud C., Meibom A., Engel P., 2024/02. Nature microbiology, 9 (2) pp. 477-489. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_5EE5F5ED8979]

preview resource BIB_C15F89398E71.P001

Spatial structure, chemotaxis and quorum sensing shape bacterial biomass accumulation in complex porous media.

Scheidweiler D., Bordoloi A.D., Jiao W., Sentchilo V., Bollani M., Chhun A., Engel P., de Anna P., 2024/01/02. Nature communications, 15 (1) p. 191. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_C15F89398E71]

2023

preview resource BIB_9260126B191C.P001

Targeted treatment of injured nestmates with antimicrobial compounds in an ant society.

Frank E.T., Kesner L., Liberti J., Helleu Q., LeBoeuf A.C., Dascalu A., Sponsler D.B., Azuma F., Economo E.P., Waridel P. et al., 2023/12/29. Nature communications, 14 (1) p. 8446. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_9260126B191C]

From microbiome composition to functional engineering, one step at a time.

Burz S.D., Causevic S., Dal Co A., Dmitrijeva M., Engel P., Garrido-Sanz D., Greub G., Hapfelmeier S., Hardt W-D, Hatzimanikatis V. et al., 2023/12/20. Microbiology and molecular biology reviews, 87 (4) pp. e0006323. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_422DE1C48246]

preview resource BIB_EFD880F71B9B.P001

Turnover of strain-level diversity modulates functional traits in the honeybee gut microbiome between nurses and foragers.

Baud GLC, Prasad A., Ellegaard K.M., Engel P., 2023/12/08. Genome biology, 24 (1) p. 283. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_EFD880F71B9B]

preview resource BIB_830347E3AE65.P001

Social network position is a major predictor of ant behavior, microbiota composition, and brain gene expression.

Kay T., Liberti J., Richardson T.O., McKenzie S.K., Weitekamp C.A., La Mendola C., Rüegg M., Kesner L., Szombathy N., McGregor S. et al., 2023/07. PLoS biology, 21 (7) pp. e3002203. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_830347E3AE65]

preview resource BIB_63EA6D4A6F50.P001

A phylogenomic and comparative genomic analysis of Commensalibacter, a versatile insect symbiont.

Botero J., Sombolestani A.S., Cnockaert M., Peeters C., Borremans W., De Vuyst L., Vereecken N.J., Michez D., Smagghe G., Bonilla-Rosso G. et al., 2023/04/29. Animal microbiome, 5 (1) p. 25. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_63EA6D4A6F50]

preview resource BIB_43DDCAB27B31.P001

Deep Divergence and Genomic Diversification of Gut Symbionts of Neotropical Stingless Bees.

Sarton-Lohéac G., Nunes da Silva C.G., Mazel F., Baud G., de Bakker V., Das S., El Chazli Y., Ellegaard K., Garcia-Garcera M., Glover N. et al., 2023/04/25. mBio, 14 (2) pp. e0353822. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_43DDCAB27B31]

preview resource BIB_04CA444001AB.P001

Integration host factor regulates colonization factors in the bee gut symbiont Frischella perrara.

Schmidt K., Santos-Matos G., Leopold-Messer S., El Chazli Y., Emery O., Steiner T., Piel J., Engel P., 2023/04/14. eLife, 12 pp. e76182. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_04CA444001AB]

2022

The gut microbiota affects the social network of honeybees.

Liberti J., Kay T., Quinn A., Kesner L., Frank E.T., Cabirol A., Richardson T.O., Engel P., Keller L., 2022/10. Nature ecology & evolution, 6 (10) pp. 1471-1479. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_185C1F4D6366]

preview resource BIB_0B0F961C038E.P001

Extensive diversity and rapid turnover of phage defense repertoires in cheese-associated bacterial communities.

Somerville V., Schowing T., Chabas H., Schmidt R.S., von Ah U., Bruggmann R., Engel P., 2022/08/27. Microbiome, 10 (1) p. 137. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_0B0F961C038E]

Home or hospital birth: the neonatal microbiota perspective.

Stojanov M., Das S., Odent M., Engel P., Baud D., 2022/04. The Lancet. Microbe, 3 (4) pp. e247. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_AA3FDAB82C60]

Mild chronic exposure to pesticides alters physiological markers of honey bee health without perturbing the core gut microbiota.

Almasri H., Liberti J., Brunet J.L., Engel P., Belzunces L.P., 2022/03/11. Scientific reports, 12 (1) p. 4281. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_B19401C23607]

preview resource BIB_DC7315AEE03F.P001

Functional strain redundancy and persistent phage infection in Swiss hard cheese starter cultures.

Somerville V., Berthoud H., Schmidt R.S., Bachmann H.P., Meng Y.H., Fuchsmann P., von Ah U., Engel P., 2022/02. The ISME journal, 16 (2) pp. 388-399. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_DC7315AEE03F]

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Phd thesis

Publications (7)

Genomic differences in gut microbiota composition between nurses and foragers of the honeybee Apis mellifera

Baud Gilles, 2023/06/26., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[serval:BIB_364E28990D8D]

Taxonomic and functional diversity of Swiss cheese starter cultures

Somerville Vincent, 2023/01/10., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[serval:BIB_014DCD5701D2]

Multi-Partite Metabolic Interactions in The Honey Bee Gut Microbiota Between The Symbionts Snodgrassella and Gilliamella and Their Host

El Chazli Yassine, 2023., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[serval:BIB_3F59D129E8A7]

Genetic determinants underlying the colonization of Frischella perrara in the honey bee gut

Schmidt Konstantin, 2021/01/17., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[serval:BIB_158FE1740064]

preview resource BIB_629178A23ED0.P001

Mechanisms underlying the evolution and coexistence of closely related gut bacteria in the honey bee, Apis mellifera

BROCHET Silvia, 2021., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[URN][serval:BIB_629178A23ED0]

preview resource BIB_06E4E8E84D5E.P002

Interactions between the gut symbiont Frischella perrara and its host the honey bee (Apis mellifera)

Emery Olivier, 2019/07/16., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[URN][serval:BIB_06E4E8E84D5E]

TOWARDS FUNCTIONAL UNDERSTANDING OF THE HONEY BEE GUT MICROBIOTA

KESNEROVA Lucie, 2019., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[URN][serval:BIB_04EA9E96A809]

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