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Liens UNIL

Faculty of Biology and Medicine

Department of Fundamental Microbiology

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Publications

Publications | Masters and Phd thesis

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Publications

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In Press | 2024 | 2023 | 2022 | 2021 | ...

In Press

DNA supercoiling enhances DNA condensation by ParB proteins.

Martin-Gonzalez A., Tišma M., Analikwu B.T., Barth A., Janissen R., Antar H., Kemps G., Gruber S., Dekker C. Nucleic acids research. Peer-reviewed.

[DOI][Pmid][serval:BIB_9F0306AB2E80]

2024

preview resource BIB_6A104A5997DB.P001

Author Correction: Direct observation of a crescent-shape chromosome in expanded Bacillus subtilis cells.

Tišma M., Bock F.P., Kerssemakers J., Antar H., Japaridze A., Gruber S., Dekker C., 2024/04/16. Nature communications, 15 (1) p. 3262. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_6A104A5997DB]

preview resource BIB_4DFF04DA4876.P001

Direct observation of a crescent-shape chromosome in expanded Bacillus subtilis cells.

Tišma M., Bock F.P., Kerssemakers J., Antar H., Japaridze A., Gruber S., Dekker C., 2024/03/28. Nature communications, 15 (1) p. 2737. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_4DFF04DA4876]

A conserved antigen induces respiratory Th17-mediated broad serotype protection against pneumococcal superinfection.

Liu X., Van Maele L., Matarazzo L., Soulard D., Alves Duarte da Silva V., de Bakker V., Dénéréaz J., Bock F.P., Taschner M., Ou J. et al., 2024/03/13. Cell host & microbe, 32 (3) pp. 304-314.e8. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_8FC71E910A82]

Structural basis for plasmid restriction by SMC JET nuclease.

Roisné-Hamelin F., Liu H.W., Taschner M., Li Y., Gruber S., 2024/03/07. Molecular cell, 84 (5) pp. 883-896.e7. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_39FEBB8303EA]

preview resource BIB_5237C9726795.P001

Connecting the dots: key insights on ParB for chromosome segregation from single-molecule studies.

Tišma M., Kaljević J., Gruber S., Le TBK, Dekker C., 2024/01/12. FEMS microbiology reviews, 48 (1). Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_5237C9726795]

2023

preview resource BIB_EEFC3A3FAD6F.P001

Dynamic ParB-DNA interactions initiate and maintain a partition condensate for bacterial chromosome segregation.

Tišma M., Janissen R., Antar H., Martin-Gonzalez A., Barth R., Beekman T., van der Torre J., Michieletto D., Gruber S., Dekker C., 2023/11/27. Nucleic acids research, 51 (21) pp. 11856-11875. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_EEFC3A3FAD6F]

preview resource BIB_A73E455C7348.P001

VirB, a transcriptional activator of virulence in Shigella flexneri, uses CTP as a cofactor.

Antar H., Gruber S., 2023/11/25. Communications biology, 6 (1) p. 1204. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_A73E455C7348]

preview resource BIB_6D567F950048.P001

SMC-based immunity against extrachromosomal DNA elements.

Liu H.W., Roisné-Hamelin F., Gruber S., 2023/08/31. Biochemical Society transactions, 51 (4) pp. 1571-1583. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_6D567F950048]

preview resource BIB_E4AD008053CC.P001

DNA segment capture by Smc5/6 holocomplexes.

Taschner M., Gruber S., 2023/05. Nature structural & molecular biology, 30 (5) pp. 619-628. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_E4AD008053CC]

2022

DNA-measuring Wadjet SMC ATPases restrict smaller circular plasmids by DNA cleavage.

Liu H.W., Roisné-Hamelin F., Beckert B., Li Y., Myasnikov A., Gruber S., 2022/12/15. Molecular cell, 82 (24) pp. 4727-4740.e6. Peer-reviewed.

[DOI][Pmid][serval:BIB_0D3204747A97]

preview resource BIB_DD6E45BF5EF5.P001

Chromosome remodelling by SMC/Condensin in B. subtilis is regulated by monomeric Soj/ParA during growth and sporulation.

Roberts D.M., Anchimiuk A., Kloosterman T.G., Murray H., Wu L.J., Gruber S., Errington J., 2022/10/11. Proceedings of the National Academy of Sciences of the United States of America, 119 (41) pp. e2204042119. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_DD6E45BF5EF5]

preview resource BIB_202D0C656B23.P001

A joint-ParB interface promotes Smc DNA recruitment.

Bock F.P., Liu H.W., Anchimiuk A., Diebold-Durand M.L., Gruber S., 2022/08/30. Cell reports, 40 (9) p. 111273. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_202D0C656B23]

preview resource BIB_8BE4A8F64584.P001

ParB proteins can bypass DNA-bound roadblocks via dimer-dimer recruitment.

Tišma M., Panoukidou M., Antar H., Soh Y.M., Barth R., Pradhan B., Barth A., van der Torre J., Michieletto D., Gruber S. et al., 2022/07. Science advances, 8 (26) pp. eabn3299. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_8BE4A8F64584]

preview resource BIB_6486FE868A87.P001

DNA tension-modulated translocation and loop extrusion by SMC complexes revealed by molecular dynamics simulations.

Nomidis S.K., Carlon E., Gruber S., Marko J.F., 2022/05/20. Nucleic acids research, 50 (9) pp. 4974-4987. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_6486FE868A87]

2021

Relief of ParB autoinhibition by parS DNA catalysis and recycling of ParB by CTP hydrolysis promote bacterial centromere assembly.

Antar H., Soh Y.M., Zamuner S., Bock F.P., Anchimiuk A., Rios P.L., Gruber S., 2021/10/08. Science advances, 7 (41) pp. eabj2854. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_20D31F118858]

preview resource BIB_40674097E50D.P001

CcrZ is a pneumococcal spatiotemporal cell cycle regulator that interacts with FtsZ and controls DNA replication by modulating the activity of DnaA.

Gallay C., Sanselicio S., Anderson M.E., Soh Y.M., Liu X., Stamsås G.A., Pelliciari S., van Raaphorst R., Dénéréaz J., Kjos M. et al., 2021/09. Nature microbiology, 6 (9) pp. 1175-1187. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_40674097E50D]

A low Smc flux avoids collisions and facilitates chromosome organization in Bacillus subtilis.

Anchimiuk A., Lioy V.S., Bock F.P., Minnen A., Boccard F., Gruber S., 2021/08/04. eLife, 10 pp. e65467. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_049AF7648880]

preview resource BIB_43B3495591E9.P001

Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding.

Taschner M., Basquin J., Steigenberger B., Schäfer I.B., Soh Y.M., Basquin C., Lorentzen E., Räschle M., Scheltema R.A., Gruber S., 2021/08/02. The EMBO journal, 40 (15) pp. e107807. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_43B3495591E9]

Gradual opening of Smc arms in prokaryotic condensin.

Vazquez Nunez R., Polyhach Y., Soh Y.M., Jeschke G., Gruber S., 2021/04/27. Cell reports, 35 (4) p. 109051. Peer-reviewed.

[DOI][WoS][Pmid][serval:BIB_AC9DF70CFFD7]

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Phd thesis

In preparation (1)

Investigating the role of CTP binding and hydrolysis in mediating the functions of ParB and ParB-like proteins

Antar Hammam, Université de Lausanne, Faculté de biologie et médecine, Gruber Stephan (dir.).

[URN][serval:BIB_D4D6CEF48DBE]

Publications (4)

preview resource BIB_BE570D550B30.P002

SMC and SMC-like proteins in genome folding and maintenance in Bacillus subtilis

Anchimiuk Anna, 2021., Université de Lausanne, Faculté de biologie et médecine, Gruber Stephan (dir.).

[URN][serval:BIB_BE570D550B30]

Chromosome organization by Smc and ParABS in Bacillus subtilis

Bock Florian Patrick, 2021., Université de Lausanne, Faculté de biologie et médecine, Gruber Stephan (dir.).

[URN][serval:BIB_11EAA5A91B09]

DNA binding and dynamic architecture of bacterial condensin

VAZQUEZ NUNEZ Roberto Jareth, 2020., Université de Lausanne, Faculté de biologie et médecine, Gruber Stephan (dir.).

[serval:BIB_6AEB02B45199]

preview resource BIB_06E4E8E84D5E.P002

Interactions between the gut symbiont Frischella perrara and its host the honey bee (Apis mellifera)

Emery Olivier, 2019/07/16., Université de Lausanne, Faculté de biologie et médecine, Engel Philipp (dir.).

[URN][serval:BIB_06E4E8E84D5E]

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