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Faculty of Biology and Medicine

Department of Fundamental Microbiology

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Publications

Publications | Masters and Phd thesis

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Publications

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2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | ...

2024

preview resource BIB_EF2AA95DF8B4.P001

Fecal transplant allows transmission of the gut microbiota in honey bees.

Cabirol A., Chhun A., Liberti J., Kesner L., Neuschwander N., Schaerli Y., Engel P., 2024/09/25. mSphere, 9 (9) pp. e0026224. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_EF2AA95DF8B4]

preview resource BIB_31414E598D6E.P001

From resonance to chaos by modulating spatiotemporal patterns through a synthetic optogenetic oscillator.

Park J.H., Holló G., Schaerli Y., 2024/08/23. Nature communications, 15 (1) p. 7284. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_31414E598D6E]

preview resource BIB_88028872E2EA.P001

An engineered bacterial symbiont allows noninvasive biosensing of the honey bee gut environment.

Chhun A., Moriano-Gutierrez S., Zoppi F., Cabirol A., Engel P., Schaerli Y., 2024/03. PLoS biology, 22 (3) pp. e3002523. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_88028872E2EA]

2023

preview resource BIB_335B2F934BB3.P001

Synthetic genetic oscillators demonstrate the functional importance of phenotypic variation in pneumococcal-host interactions.

Rueff A.S., van Raaphorst R., Aggarwal S.D., Santos-Moreno J., Laloux G., Schaerli Y., Weiser J.N., Veening J.W., 2023/11/17. Nature communications, 14 (1) p. 7454. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_335B2F934BB3]

preview resource BIB_08B8A64D03F1.P001

Synthetic Gene Circuits Combining CRISPR Interference and CRISPR Activation in E. coli: Importance of Equal Guide RNA Binding Affinities to Avoid Context-Dependent Effects.

Barbier I., Kusumawardhani H., Chauhan L., Harlapur P.V., Jolly M.K., Schaerli Y., 2023/10/20. ACS synthetic biology, 12 (10) pp. 3064-3071. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_08B8A64D03F1]

preview resource BIB_2BCC90477E24.P001

Environment-dependent epistasis increases phenotypic diversity in gene regulatory networks.

Baier F., Gauye F., Perez-Carrasco R., Payne J.L., Schaerli Y., 2023/05/24. Science advances, 9 (21) pp. eadf1773. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_2BCC90477E24]

preview resource BIB_5D0D254CCA47.P001

Robustness and innovation in synthetic genotype networks.

Santos-Moreno J., Tasiudi E., Kusumawardhani H., Stelling J., Schaerli Y., 2023/04/28. Nature communications, 14 (1) p. 2454. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_5D0D254CCA47]

2022

preview resource BIB_1E95F9FE260E.P001

Engineering synthetic spatial patterns in microbial populations and communities.

Barbier I., Kusumawardhani H., Schaerli Y., 2022/06. Current opinion in microbiology, 67 p. 102149. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_1E95F9FE260E]

2021

preview resource BIB_CB90D7E34905.P001

Addressing Evolutionary Questions with Synthetic Biology

Baier Florian, Schaerli Yolanda, 2021. pp. 135-157 dans Evolutionary Systems Biology, Springer International Publishing.

[URN][DOI][serval:BIB_CB90D7E34905]

2020

preview resource BIB_5D99E1081188.P001

CRISPR-based gene expression control for synthetic gene circuits.

Santos-Moreno J., Schaerli Y., 2020/10/30. Biochemical Society transactions, 48 (5) pp. 1979-1993. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_5D99E1081188]

preview resource BIB_9C270BA8A587.P001

Multistable and dynamic CRISPRi-based synthetic circuits.

Santos-Moreno J., Tasiudi E., Stelling J., Schaerli Y., 2020/06/02. Nature communications, 11 (1) p. 2746. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_9C270BA8A587]

preview resource BIB_35C2422DBA31.P001

Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch.

Barbier I., Perez-Carrasco R., Schaerli Y., 2020/06. Molecular systems biology, 16 (6) pp. e9361. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_35C2422DBA31]

preview resource BIB_6E706DA3083C.P001

Changing the biological Rosetta stone: the (commercial) potential of recoded microbes.

Santos-Moreno J., Schaerli Y., 2020/01. Microbial biotechnology, 13 (1) pp. 11-13.

[URN][DOI][WoS][Pmid][serval:BIB_6E706DA3083C]

2019

preview resource BIB_6CD3635A3577.P001

Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch

Içvara Barbier, Rubén Perez Carrasco, Yolanda Schaerli, 2019/11/21..

[URN][DOI][serval:BIB_6CD3635A3577]

preview resource BIB_842B803713F3.P001

A Framework for the Modular and Combinatorial Assembly of Synthetic Gene Circuits.

Santos-Moreno J., Schaerli Y., 2019/07/19. ACS synthetic biology, 8 (7) pp. 1691-1697. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_842B803713F3]

preview resource BIB_90894E74453C.P001

Using Synthetic Biology to Engineer Spatial Patterns.

Santos-Moreno J., Schaerli Y., 2019/04. Advanced biosystems, 3 (4) pp. e1800280. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_90894E74453C]

2018

preview resource BIB_E4CEE618A944.P001

Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution.

Schaerli Y., Jiménez A., Duarte J.M., Mihajlovic L., Renggli J., Isalan M., Sharpe J., Wagner A., 2018/09/10. Molecular systems biology, 14 (9) pp. e8102. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_E4CEE618A944]

preview resource BIB_E06DF5436657.P001

Bacterial Microcolonies in Gel Beads for High-throughput Screening.

Schaerli Y., 2018/07/05. Bio-Protocol, 8 (13) pp. e2911. Peer-reviewed.

[URN][DOI][Pmid][serval:BIB_E06DF5436657]

preview resource BIB_832AED933B6C.P001

Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors.

Perez-Carrasco R., Barnes C.P., Schaerli Y., Isalan M., Briscoe J., Page K.M., 2018/04/25. Cell systems, 6 (4) pp. 521-530.e3. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_832AED933B6C]

2017

preview resource BIB_6AE8F65F20EA.P002

Bacterial Microcolonies in Gel Beads for High-Throughput Screening of Libraries in Synthetic Biology.

Duarte J.M., Barbier I., Schaerli Y., 2017/11/17. ACS synthetic biology, 6 (11) pp. 1988-1995. Peer-reviewed.

[URN][DOI][WoS][Pmid][serval:BIB_6AE8F65F20EA]

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Phd thesis

Publications (2)

Synthetic gene regulatory networks for pattern formation

Barbier Içvara, 2022., Université de Lausanne, Faculté de biologie et médecine, Schaerli Yolanda (dir.).

[URN][serval:BIB_38BCCE1D6958]

Experimental evolution of a duplicated dual-color-emitting fluorescent protein

Mihajlović Ljiljana, 2022., Université de Lausanne, Faculté de biologie et médecine, Schaerli Yolanda (dir.).

[serval:BIB_A1E27CF77561]

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