Tools for spatial ecologists

CRAN - The comprehensive R archive network (Swiss mirror)
mapview - on-the-fly mapping of spatial in R (tutorial)
Quick-R – User-friendly guide for users of statistical packages (e.g., SAS, SPSS) who would like to transition to R
BIOMOD – R library for ensemble forecasting of species distributions
DISMO – R library for species distributon modeling (including MaxEnt)
GDM - R library for Generalized dissimilarity modeling
BIOMAPPER - A GIS-toolkit to model habitat suitability
ADE-4 – R library for analysis of ecological and environmental data
STATLIB - Data, software and news from the Statistics Community
Stockwell’s webpage –Niche modeling blog
ESRI – support for ArcGIS
GRASS and DIVA-GIS - free GIS softwares
Niklaus Zimmermann’s webpage – Tools for mapping biophysical variables
Colorbrewer - color advice for cartography
Marxan and ZONATION - softwares for spatial conservation planning (e.g. design reserve systems, assess performance of existing reserves, develop multiple-use zoning plans)
prioritizr - R package for solving systematic conservation prioritization problems using integer linear programming (ILP)
sdmvspecies and virtualspecies - R libraries to create virtual species for species distribution modelling
R interface to Keras - high-level neural networks API
maxnet- Fitting 'Maxent' Species Distribution Models with 'glmnet' (Phillips et al. 2017)
PaleoView - a tool for generating continuous climate projections spanning the last 21 000 years at regional and global scale. github
remap - remote ecosystem monitoring assessment pipeline
zoon - R package for reproducible and shareable species distribution modelling
Wildnote - An app to collect field data
hsdm- R package for estimating parameters of hierarchical Bayesian species distribution models
dispeRsal - an R tool to predict seed dispersal distances from plant traits (growth form, dispersal mode, seed mass, plant height)
IUCN redlist Tools and Data - A range of arcGIS tools and resources to help create distribution maps in a format appropriate for publication in an IUCN Red List assessment (version for R: redlistr package)

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